phyloref phyloref-ontology issues

phyloref / phyloref-ontology

Phyloreferencing Ontology and OWL DL reasoning with phyloreferences

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Adding terminology for indicating expected and actual node resolution

#55 gaurav opened 6 months ago
3
Decide on IRI for gators example ontology

#54 hlapp opened 3 years ago
2
Decide on maintenance of Campanulaceae and Tetrapoda examples

#53 hlapp opened 3 years ago
3
Updates versions of imported Phyloref and TCAN

#52 hlapp closed 3 years ago
2
Uses new OBO Metadata Ontology (OMO)

#51 hlapp closed 3 years ago
0
Removes annotations on :TUMatch class, which is currently obsolete

#50 hlapp closed 3 years ago
0
Sets range constraints to TU on includes_TU and has_outside_TU

#49 hlapp closed 3 years ago
0
Range constraint on properties with the '_TU' suffix

#48 hlapp closed 3 years ago
0
Cleans up the gators example from lots of cruft

#47 hlapp closed 3 years ago
0
Maximum or minimum clade phyloreference type are not inferred

#46 hlapp closed 3 years ago
1
Adds PhyloreferenceUsingApomorphy class and apomorphy property

#45 hlapp closed 3 years ago
3
Asserts ReferencePhylogenyEvidence as subclass of CDAO:Tree

#44 hlapp closed 3 years ago
0
Corrects relationship hierarchy for OpenBioDiv terms

#43 hlapp closed 3 years ago
0
An object property for identifying the component classes of a phyloreference

#42 gaurav closed 3 years ago
3
Assert ReferencePhylogenyEvidence as subclass of CDAO:Tree

#41 hlapp closed 3 years ago
1
Add`phyloref:apomorphy` as an annotation property for describing an apomorphy

#40 gaurav closed 3 years ago
4
Create class `PhyloreferenceUsingApomorphy` for apomorphy-based phyloreferences

#39 gaurav closed 3 years ago
0
Adds small example ontology of gators

#38 hlapp closed 3 years ago
2
Adds has_outside_TU property for maximum clade defs

#37 hlapp closed 3 years ago
2
Fixes and improvements for Maximum / Minimum Clade subclasses of Phyloreference

#36 hlapp closed 3 years ago
5
Substitute new OBO metadata ontology (OMO) for IAO import

#35 hlapp closed 3 years ago
1
Current release has minimum and maximum clade definition descriptions mixed up

#34 hlapp closed 3 years ago
0
Capture crown-clade and total clade semantics

#33 hlapp opened 5 years ago
2
TCAN is not in EL

#32 hlapp opened 5 years ago
0
Changes phyloref imports to use versionIRI

#31 hlapp closed 5 years ago
6
Adds automation of OWL format generation and deployment

#30 hlapp closed 5 years ago
1
First major revision of the Phyloref Ontology

#29 hlapp closed 5 years ago
1
Initial version of the Ontology for Taxon Concepts and Names

#28 hlapp closed 5 years ago
3
Prepares for initial release

#27 hlapp closed 5 years ago
0
An object property for asserting that a phyloreference should resolve to a particular node in a phylogeny

#26 gaurav closed 5 years ago
3
Support the OWL RL profile

#25 gaurav opened 5 years ago
1
Translate ontology into OWL Functional Syntax with a workflow for generating RDF/XML

#24 gaurav closed 5 years ago
1
Adds CC Zero in plain text format

#23 hlapp closed 5 years ago
0
Missing license

#22 hlapp closed 5 years ago
3
Changes to a resolvable (and custom domain) IRI ontology.phyloref.org

#21 hlapp closed 5 years ago
1
Translated ontology in RDF/XML with an OWL Functional Syntax

#20 gaurav closed 5 years ago
3
Replaced single-element property chain with subproperty axiom

#19 gaurav closed 6 years ago
4
A datatype property for the verbatim clade definition of a phyloreference

#18 gaurav closed 5 years ago
4
A datatype property for the Newick representation of a phylogeny

#17 gaurav closed 5 years ago
3
An object property to list phyloreferences in a PHYX study

#16 gaurav closed 5 years ago
3
An object property for listing phylogenies in a PHYX Study

#15 gaurav closed 5 years ago
3
A class for a PHYX study

#14 gaurav closed 5 years ago
6
An object property for indicating taxa included in a taxonomic unit

#13 gaurav closed 5 years ago
15
An object property for indicating specimens included in a taxonomic unit

#12 gaurav closed 3 years ago
5
An object property for indicating taxonomic units involved in a Taxonomic Unit match

#11 gaurav closed 3 years ago
6
Clarify the definition of Taxonomic Units

#10 gaurav closed 5 years ago
2
A new OWL class for Taxonomic Unit matches

#9 gaurav closed 3 years ago
3
An object property for associating an external specifier with a phyloreference

#8 gaurav closed 5 years ago
8
An object property for associating an internal specifier with a phyloreference

#7 gaurav closed 5 years ago
5
An object property for referencing taxonomic units from specifiers

#6 gaurav closed 5 years ago
6