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New config format from Breaking Improvements
- use config writer (Shaun)
- Add race/ethnicity and contact matrices
- create SEIR (Sara)
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The [{contactmatrix}](https://github.com/socialcontactdata/contactmatrix) R package aims to unify the underlying data structure used by packages that use contact matrices. {epiparameter} aims to do so…
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In `model.preprocessing`, `k_home` and `k_all` are currently defined by reading in the UK contact matrices from `inputs/MUestimates__.xlsx`. Similarly, `pop_pyramid` is read in from `inputs/United Kin…
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**Acceptance Criteria**
1. Show ISO format in date time fields in UI
- UTC >>> 2024-05-07T04:03:11+00:00
- MMT >>> 2024-05-07T10:33:11+06:30
2. These are the following items to update the dat…
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Hi !
author
Thank you for developing such a user-friendly tool and providing detailed documentation. I have two simple questions I'd like to ask:
1. Does a cool file need to be balanced (lik…
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Thanks for all your great work on this package. We’ve been looking at combining the {[epidemics](https://epiverse-trace.github.io/epidemics/)} package interface (which makes contact matrices, interven…
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One can pass new contact matrices to either `make_simulator()` or `simulate()` in a `contact.pars` entry of the `values` list argument. If this entry isn't passed, contact parameters will be generated…
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> bash ./hic2give ./ test.hic giveInteraction.bed 40000
>
bin size that user wants to extract the data from (please make sure the bin size you entered is contained in the hic file).
I'm trying t…
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Hello,
I was trying to use pyNastran to read my OptiStruct results. Everything went well until I tried it on model with contact. This error has been caused by nodes that have been in contact as I fou…
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Pull other contact surveys from `socialmixr::list_surveys()` and/or Zenodo and run these through the `targets` workflow to create contact matrices.
Nick suggests reverse-engineering `conmat`'s `cre…