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### Description of feature
There are many other kind of smRNA in smRNAseq data besides miRNA, some people will trough them away, but some other will use it to investigate new hot-spots in the genomes…
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### Description of the bug
Hi am working with the pipeline, in the test working fine. with samples do not report the VARIANT_CALLING, there is no error in the run.
How I can make that processes?
##…
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### Description of the bug
The `test_full`-profile doesn’t run out-of-the-box on scrnaseq v.2.7.1:
```
nextflow run nf-core/scrnaseq -r 2.7.1 -profile test_full,singularity --outdir results
...
…
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### Description of the bug
Hello,
I hope you're doing well. I’m a bit confused with a question. I ran the pipeline using the GRCh38 reference genome and Mutect2 in paired tumor-normal files. The e…
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Hi @tseemann, I see you posting often on this github, so thought I'd ask!
I'm having some issues getting a core genome alignment of around 300 full-length _E.coli_ sequences w/ ROARY.
The prog…
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Hi,
I used short and long-reads to assemble a bat genome. I used pomoxis to assemble it using a reference, and I got 98 contigs. Busco score was 97%, I then mapped the reads back to the assembly, man…
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### Description of the bug
On my university's cluster, users are penalized (with priority reduction) for requesting more RAM than they actually use. So the fact that the pipeline requires at least 72…
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Hi,
I am currently running EarlGrey for a gymnosperm genome (>10 Gbps), and the process has been running for over 7 days on 48 cores. However, our HPC has a running time limitation of 7 days, which…
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Hey Robert, for the last couple of days I have been trying to run panaroo on my samples and it is getting stuck on the initial step for hours. There was no error message, its just stuck on the same pl…
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After updating to 0.4.3, genome_fetcher.py reported error:
```
DAJIN2 --control barcode01 --sample barcode02 --allele actc1L_cont_knockin.fa --name 02 --genome xenLae2 --threads 8
2024-03-29 11:48…