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Hi there,
I installed microbiomeutilities on our Rocky Linux 9 system, with R version 4.3.2.
I did not get any ERROR but only warinigs:
> `> devtools::install_github("microsud/microbiomeutilit…
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**Describe the bug**
After selecting files and running the analysis, it shows 'Waiting for logs' and at the bottom of page it says 'Pipeline could not start'
**Screenshots**
![image](https:/…
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I was looking through my bins created by the bin refinement module (underfolder metawrapbins). I have a total of 406 bins but the last bin is labeled 407. So I skimmed through them to see why and noti…
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New error when running taxonomy
**Command:**
cd $tmp
in_dir=/projects/cmi_proj/blood_microbiome/niaid/combined
out_root=$in_dir/shogun
align_dir=$out_root/wol_alignments
taxonomy=/projects/c…
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We should do this sooner than expected, because it's a dependency for the Microbiome Paper.
- [ ] https://github.com/VEuPathDB/plot.data/issues/239
- [ ] make a function to get a node's neighbors
…
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**Snakemake version**
Version 6.3.0
**Describe the bug**
When executing a Snakemake workflow using google life sciences executor, the first few jobs go through and then I get an SSL error. The …
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I've added the Sample Collection chapter. It is currently just a place holder, but I'm going to add information about collecting samples for DNA, RNA, and microbiome (maybe). @sdhutchins I'm also go…
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Hi,
Trying to use gemelli as a qiime2 plugin and I get the following error:
```
/home/sdegregori/miniconda3/envs/qiime2-2023.7/lib/python3.8/site-packages/gemelli/preprocessing.py:423: RuntimeW…
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### Please make sure these conditions are met
- [x] I have checked that this issue has not already been reported.
- [x] I have confirmed this bug exists on the latest version of anndata.
- [ ] (optio…
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Hi microbiome team,
Over in dada2 land we are interested in linking our package with other excellent Bioconductor microbiome packages. The primary way we have done this so far is to integrate "stubs"…