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Make a cheap model of water placement (Monte Carlo?). This could build off of a routine in openmm that places water and removes them if they are too close (a type of rejection sampling).
https://gi…
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# What?
- [ ] Implement the projection operation of the cryo-EM image formation model on a 3D array in Fourier space, which is a slicing operation.
- [ ] Add details about the structure of the `co…
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# What?
- [ ] Implement the shift operation of the cryo-EM image formation model in image space, which is a translation operation.
- [ ] Add details about the structure of the `config` input to th…
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Making the following changes to the cryo-EM model, it should be possible to correctly predict α- and β-ionone, and δ-decalactone, as agonists using a theoretical alternative active configuration:
-…
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Hi,
As searching for protein-protein interactions, my aim was to find similar interfaces in the PDB with Foldseek-multimer. I thought it would only return hits where the two similar chains are in i…
gezmi updated
4 months ago
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Great Work! It seems that ModelAngelo organizes a training set with good quality. Do you have plans to release them? I think it's a great resources for the computational CryoEM community.
Qmi3 updated
2 months ago
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**Describe the bug**
Some text of plan is missing in .docx download of DMP
**To Reproduce**
Steps to reproduce the behavior:
1. Log in as Super Admin to DMP Tool
2. Go to this DMP (unsure if ha…
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Dear PointNet team,
I'm applying PointNet to my dataset, Cryo-EM maps with xyz coordinates and density values. Your model applies to 3D points. My dataset has 4 features (xyz coordinates + density …
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Here is a list of high value features/demonstrations for the cryo-EM/ET community that I would love to see/help make happen in Mol*
- [ ] tiled view of multiple volumes with synchronised rotations (e…
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Hi, great work developing this tool. Looks really cool and I am trying to install this plugin in Napari to use with my cryo-FIB data, but I have encountered a few issues. I wasn't able to install thro…