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Hi,
(thanks for a great application)
Toxic model averaging works fine, as far as I can judge, but I never get any GO/reactome/bioplanet results for Danio rerio although mouse and fruitfly works fine…
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### Context
We want to add more advanced search features to Search API endpoint. Advanced features will allow API users to be able to construct nested logical operators in their queries. There will…
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I was trying to create custom miso annotation using [these instructions](https://rnaseqlib.readthedocs.org/en/clip/#creating-custom-gff-annotations-for-miso) but got the following error:
``` shell
py…
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I'm rerunning a pipeline after upgrading STAR to 2.9.4 and getting this error which used not to arise for the identical job.
It is unclear why this might now happen.
There is nothing in recent r…
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## Design
**October 21 2024** Superseded by draft [5.2.1-experimental.md](https://github.com/chanzuckerberg/single-cell-curation/blob/main/schema/drafts/5.2.1-experimental.md)
---
This draft …
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Hi, I've tried to run seed-to-alignment in another computer and this time it ran to the finish, but all sequences were removed (they get flagged Keep=false) and the final file (06_alignment.fasta) onl…
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code:
java -jar /share/work/biosoft/GeMoMa/GeMoMa-1.9/GeMoMa-1.9.jar CLI GeMoMaPipeline \
threads=200 AnnotationFinalizer.r=NO p=false o=true tblastn=false \
t=contig.hardmasked.fa outdir=gemom…
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### Report
Dear all,
I used ChromBPNet architecture to train the model. I have there 32 different cell types, ~50k cells and ~450k regions.
I successfully ran tfmodisco-lite without a motif D…
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The list of model organisms that researchers are using for studies of development is the following:
- Human - Homo sapiens
- Mouse - Mus Musculus
- Zebrafish - Danio rerio
- Chick embryo - Gallu…
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if a URL is remote (starts with http . . . .) it needs to use the URL instead of the relative local path.
If we can further look at the relative local URL, to see if its correct if it should not …