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Hi
I have been trying ZINB-Wave for generating weights for edgeR for a 10x dataset and I have got some results that look a bit strange. Here is what I have been doing so far:
```r
zinb_model
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This was a very well done workshop! Found it super helpful in understanding heteroscedasticity.
I have to ask though if/when you are planning on doing more of these?
Thank you,
Alex
PS: Here is the …
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Dear SCA-IRCM,
I'm using the SEURAT example,
I have a Seurat Object that I clustered into 10 clusters (0,1,2,3,4,5,6,7,8,9)
When I run the signal = cell_signaling(data=data,genes=all.genes,cluste…
EAC-T updated
3 years ago
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Hi!
I want to run the pipeline for my data with multiple conditions. Eg. my data has like fibroblast, adipocytes, etc. but also treated vs. control. Where is the parameter to input an additional co…
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Hi,
I fetched MultiQC with
```bash
curl -LOk https://github.com/ewels/MultiQC/archive/master.zip
tar -xf master.zip
cd MultiQC-master
pip install .
```
Via `where multiqc` I could also id…
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Following on from internal Slack discussion (https://ritchie-lab.slack.com/archives/CDMAPG81F/p1706657023484329).
I'm generating a large number (> 150) glimma MDS and MA plots for the same project.…
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Hi!
I'm getting a crash when running emptyDropsCellRanger.
The call:
```
DropletUtils::emptyDropsCellRanger(dge)
```
Where dge is a matrix of cells by genes. I'll note this data set is comp…
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In [`957f7b2`](https://github.com/edu-red/DGE-GOV/commit/957f7b21f8ee6e23d586e69847fcf986578169d2
), Portal-DGE (https://www.mendoza.edu.ar) was **down**:
- HTTP code: 0
- Response time: 0 ms
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irGSEA.heatmap.plot
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Hi
I was trying to covert my matrix of normalized results post DESeq2 pipeline back to a DESeq object:
(A) First I ran DESeq and normalization to result to a matrix (abund):
dds = phyloseq_to_dese…