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Hi!
First of all, thank you for developing such a useful tool for analyzing Perturb-seq data! I have a question regarding the differential expression analysis in Mixscale. From reviewing the source c…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/dozmorovlab/scHiCcompare
Confirm the following by…
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In this manuscript DAA methods have been benchmarked and a new method was proposed: https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-022-01320-0 we should check if any of these meth…
mlist updated
1 month ago
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What do we want?
- Flow analysis:
- [x] reaction plane flow (integrated)
- [x] reaction plane flow (differential)
- [x] event plane flow (integrated)
- [x] event plane flow (differential)
- [x]…
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Dear developers of Mustache,
thank you for this interesting tool. I would like to run differential analysis on 2 hic samples but I tend to get error:
```
$ mustache -f1 sample1.hic -f2 sample2.…
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I am doing some differential analysis of 16s rRNA data and following code in this vignette:
https://joey711.github.io/phyloseq-extensions/DESeq2.htm
```
sigtab
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add support for supply chain smell "no code signature"
for differential analysis: the equivalent would be "changed signing signatures"
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Hey! First of all thanks for the amazing work on IRFinder.
I have used the tool and was able to successfully get the IRFinder output files.
I want to do a differential intron expression analysis for…
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After merging #80, a results table with adjusted p-values and log fold change across replicates can be generated.
This is a reminder that a plotting function for such bins using a pval or/and logfc…
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Hello,
Thank you very much for developing MIcrobiomeAnalyst, I have enjoyed using it. Unfortunatly since yesterday differential abundance analysis is down on its webserver and I cannot install the R…