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I am wondering if this tool works with genes with ENSEMBL IDs
Flu09 updated
2 months ago
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We should add a `is_gencode = TRUE` default argument such that when it's set to `FALSE`, it matches using ENSEMBL IDs instead of Gencode IDs. Aka, it removes the trailing `.[0-9]` in the IDs.
This…
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My dataset is annotated with human ENSEMBL IDs rather than gene symbols. I see in the human database, you have annotated gene symbols with ENSEMBL IDs.
Is it possible to use ENSEMBL IDs with CellC…
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- [x] The process of adding nodes is slow, we should figure out what part is slow (i.e. adding edges, getting current positions etc). There might also be a built-in delay in the addCyNodes function. -…
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Genes and transcripts currently have generically named ID fields `gene_id` and `transcript_id`. `ensembl_gene_id` and `ensembl_transcript_id` fields should be added to clarify that these are Ensembl g…
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### Description of feature
Dear all
I just found out that in commit https://github.com/nf-core/scrnaseq/commit/aae5fc5f618d1a4ccd40428d14050d838876f7fe we moved away from having ensembl_gene_ids a…
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Hello,
I am working on TBI in killifish using bioinformatics approach.
I want to investigate killifish clusters and it’s subclusters as it is not very well studied. I want to discover the cell typ…
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In version .80:
For rice(Oryza sativa Japonica Group), both ensembl gene ids and ensembl transcript ids from example form won't be recognized by ShinyGO. While other type of the gene ids in the form …
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On NodeNorm, [ENSEMBL:ENSP00000263368](https://nodenormalization-sri.renci.org/1.3/get_normalized_nodes?curie=ENSEMBL%3AENSP00000263368&conflate=true) exists as a single-identifier clique. However, ve…
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From MapURL
"primaryTopic": {
"_about": "http://www.uniprot.org/uniprot/P56817",
"exactMatch": [
"http://identifiers.org/ensembl/ENSG00000265969",
"http://identifiers.org/ensembl/ENST…