-
I am trying to analyze data that uses multiple REs.
I learned that from
ARIMA kit: ^GATC,G^ANTC
ligation product of the ARIMA kit: GATCGATC,GANTGATC,GANTANTC,GATCANTC
What should these
digest…
-
Hi, thank you for the great package and documentation. I would like to simulate a Type2s-like assembly where the acceptor and the inserts are digested by different enzymes. In other words, the accepto…
-
Hi,
I'm using the package to retrieve the enzymes and their reactions but the output from the package is missing reactions and enzymes found on the website. For example in the https://www.genome.jp…
-
using CAZy database (http://www.cazy.org/)
RNAer updated
8 years ago
-
### Setup
I am reporting a problem with Biopython 1.81, Python 3.8.17, and operating
system as follows:
```python
import sys; print(sys.version)
import platform; print(platform.python_impleme…
-
How can I add an extra enzyme, amylase 3.2.1.1, into the BacArean system using addSubs() ?
Thank you!
Best,
Xuejian
_Originally posted by @XuejianXiong in https://github.com/euba/BacArena/iss…
-
To ensure that measured overexpressed enzymes have a log laplace distribution and other measured enzymes have a log normal distribution, we replace
```python
e_measured = pm.Normal('log_e_measured…
-
Hi,
Could you please give me some more info about the confidence score? How would you define a high-quality prediction, for both enzymes and non-enzymes and how to select an HQ dataset?
Than yo…
-
Currently xiFDR can only export a single standard predefined enzymes to mzIdentML. If something else is used (e.g. multiple enzymes) xiFDR will just offer to pick a standard enzyme from a given list.
…
-
Enzymes are becoming more common as science progresses, and many are carried by homebrew shops and produced by popular labs like lallemand, white yeast labs, wyeast etc.
Need to be added as an opt…