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Top-level issue to contain sub-tasks:
- [ ] in vivo cortex development bulk RNA-seq (#8)
- [ ] in vivo cortex development single-cell RNA-seq (#9)
- [ ] stem cell models of human cortex developm…
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From NeMO-Analytics created by [RLC-DCPPC](https://github.com/RLC-DCPPC) : RLC-DCPPC/NeMO-Analytics#2
Top-level issue to contain sub-tasks:
- [ ] in vivo cortex development bulk RNA-seq (#9)
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## Description
As a bioinformatician, I would like to run the complete workflow, including generating QC plots, pairwise clustering, regional methylation, and DMR analysis on the Farlik 2016 data s…
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test dataset:
This is a dummy test dataset from a small subsamples of reads from one of our project
BAM and BED files from:
http://ns104190.ip-147-135-44.us:8088/dataset_report?dataset_name=L…
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@SamMcConnell
I need index files to work with WGS bam files. I tried to generate them but seems I can't write to your folder. Could you run the following commands for me? Thanks!
```
cd /projects/…
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**User story**
For epigenomics/scATAC-seq data, we can show a list of the called peaks in the feature list view, but this is not very interpretable or user-friendly. Instead, a peak-to-gene linkage s…
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[//]: # (You can add comment regarding your issue hereafter)
### Comments
- tiny change to definition
- link with topics = epigenetics, epigenomics
[//]: # (End of issue comments)
### Hereafte…
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I have curated multi-gene displays for all datasets in the following profiles (very few have issues and I am keeping track of them and will create tickets later):
- Adult
- Aging
- Central auditory…
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Requirements for each workflow
- Adding description in meta
- Adding Ref map file location to description (indicate this is for inter-organizational use: private)
- Adding input description in para…
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