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Currently waveorder can output negative fluorescence intensity. This leads to inconveniences in visualization (auto-contrast will boost background noise) and downstream numeric processing. I can think…
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**Submitting author:** @sajjad88 (Sajjad Khan)
**Repository:** https://github.com/LidkeLab/matlab-instrument-control
**Branch with paper.md** (empty if default branch):
**Version:** v0.1.0
**Editor:*…
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- cellpose's 3d algorithm fails with our brightfield data. our XZ and YZ slices are riddled with diffraction that make cell identification extremely difficult
- cellpose's 3d algorithm works well wi…
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**Describe the bug**
Issue with dimensions when loading fluorescence data
dimension name = scicon_wlbb2fl_wlbb2fl_data_point
**To Reproduce**
Try load the data:
names = [
'wlbb2fl_FL2s…
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Hi,
I have two recordings from two channels (Ch1 and Ch2) of same ROI:
- Neurons in Ch1 and Ch2 have certain level of overlap.
- Neurons in Ch1 have normal activity, while neurons in Ch2 …
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move of the Bragg syncrhonized with IDGAP
detectors: i0, it, fluorescence (xpress3)
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Exposure time for fluorescence mode in the Erlangen setup is limited up to 7 ms and cannot be set above 7 ms.
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I'm planning to move the fluorescence reconstructions to `torch` and to the new `model`-based structure.
- the `waveorder_reconstructor/fluorescence_microscopy` class will eventually be deprecated
…
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I expect the current set of properties for labware (specifically microplates), includes things like color, if it is opaque or translucent, etc.
But I came across an unexpected additional property.…
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**Submitting author:** @TomosRich (Tomos Rich)
**Repository:** https://github.com/TomosRich/PLIF-Processing
**Branch with paper.md** (empty if default branch):
**Version:** 1.0
**Editor:** @jgostick
…