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Hi all,
I am using the latest fusioncatcher build from github for fusion prediction in a set of solid tumor samples. However, the results in the summary table include many fusions (classified as re…
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Hi,
I am using FuSeq and got a list of genes. I want to visualize the fusion genes. is it possible to visualize the fusion genes from the results of the FuSeq.
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Collaborators have asked if we could implement a module for performing differential analysis.
After speaking with Dan T., we believe that we can do so in the existing application without bogging t…
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Thank you for creating a nice software!
I'm wondering if it makes sense to exclude genes with poor prediction accuracy from prediction model as it could be noisy information.
Do you have any idea?
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Filter and prioritize fusion calls with [annoFuse](https://github.com/d3b-center/annoFuse)
Prerequisites:
- human samples (looks like hg38 only)
- Arriba results (RENEE already does this!)
- Star …
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### Description of feature
Following up on https://github.com/nf-core/rnaseq/pull/1369#discussion_r1744079079.
@MatthiasZepper Please take over this issue.
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Hi Liz,
I'm using fusion_finder.py to identify a fusion gene in a allopolyploid,It is known that there are some fusion genes generated by homologous exchange in this allopolyploid. Can the fusion …
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Hi there,Do I need full-length transcripts to use ESPRESSO? For example, if the reads are not full-length, do they need to be filtered out?
Why do different positions of the same transcript support d…
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Is there any way I can speed up the `STAR-Fusion.map_chimeric_reads_to_genes` step? It doesnt appear to be multithreaded, that is, the `CPU` parameter has no effect on this part of the STAR-Fusion pro…
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Hi, I was using the FuSeq_WES module to run the detection of fusion genes (in particular MYB-NFIB and MYBL1-NFIB) in our WES data. These fusion genes are the hallmark of that cancer type. I did not en…