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Hi there,
First, thanks for your work and the latest updates!
We stumbled across a few samples from the last months that pangolin assigns to a top-level lineage, namely BA.2 or XBB.1.
The nextc…
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Would be great if you could upload open sequences from the proposal directly to the Github issue so that it can be easily checked in Nextclade & co (you may have to make the ending `fasta.txt` so Gith…
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Hi there
I'd like to package this in bioconda (as a first step towards writing a Galaxy wrapper). Can you please tag a release with a version number (preferably a semantic versioned one) to make it…
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Inspired by @cassiawag's work on large deletions in ORF7/8 often masquerading as stretches of Ns in assemblies rather than as deletions, I had a look through currently submitted sequences to see if I …
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**Description**
**Sub-lineage of:** BA.2
**Earliest sequence:** 2024-7-14, Spain – EPI_ISL_19322462
**Most recent sequence:** 2024-7-16, Spain – EPI_ISL_19370418
**Continents circulating:** Europe…
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Transferred from sars-cov-2-variants/lineage-proposals#1827
Thx @aviczhl2 .
Mutations based on JN.1: C18657T, C19716T, C21627A(S:T22N), T21738C(S:F59S) / T22928C(S:F456L), C23039G(S:Q493E), G24872…
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## Proposal for new sublineage f BA.2.86.1with additional mutations S:N30G and S:G594S
Countries detected: Denmark(10)
Earliest sequence: (dd-mm-yy) 19-09-23
Defining mutations: S:N30G and S…
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- [x] check-submissions: Allow option to update a single submission instead of updating all submissions in log.
- [x] **other organism: Allow any organism to be used with the flag "other" .**
Other …
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Click to see the original proposal designated **LF.6**
Previously tracked as Branch 133 **FLiRT** of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089
JN.1 > T17859C > T31…