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A separate haplogroup can be requested based on Y-STR data, but there is no place to input that information under "Additional Tests" - see image.
![cora2](https://user-images.githubusercontent.com/…
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Used data:
https://github.com/apeltzer/mitoDB-data/blob/master/data/Modern/1000GP3/1000GP3.csv
https://github.com/apeltzer/mitoDB-data/blob/master/data/Modern/1000GP3/1000GP3.fasta
Clicked on An…
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Dear Hao Chen and Prof. Xu,
I can run the cluster model with the example data, however, when we run the cluster model with the new-sequenced data, the following errors occurred. Would you mind sharin…
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Hi,
than you for this workflow ! I successfully ran it for 2000WGS ! However, I got a 'too many files open' for VCF_MERGE and I add to modify the 'script' section run `bcftools merge` by batch of …
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Hi, I used install.sh to installed this sofeware, how ever when I test it by using test file of this software, it seems missing file/dir VCF-dict_tmp. I think there may be some installed problem that …
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Where downloading the yfull tree as follows:
ycomp tree download-yfull --hg R-M269
I get the following error:
Downloading YFull tree from ...
Finished downloading YFull tree.
Processing YF…
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I have array genotypes and thus most of Y loci are no known, is it possible to improve algorithm so that it will not assign the wrong haplogroup? For example, our population have no N1a individuals, y…
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When using RCRS vs RSRS for the same file., there is a difference in the output haplogroups. There are much more with RSRS as opposed to RCRS. Is there a big difference in the genome files? Also, ther…
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Hey is there any way to generate a `Build_17_-_rCRS-based_haplogroup_motifs.csv`? I don't know how you made this but it would be a useful resource for the community.
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- based on sub/sup of the perfect variants when it's all sorted