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Hi
I tried to run HiC Assembler over conda environment with Python 2.7 and an old version of some packages as hicexplorer v2.2 and biopython v1.76 (last supported for Python 2.7), when I tried to e…
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Add distance decay curve.
See HiCExplorer ;
https://hicexplorer.readthedocs.io/en/latest/content/tools/hicPlotDistVsCounts.html#hicplotdistvscounts
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Hi ,
I'm experiencing an issue with hicPCA, where it gives a ValueError. I'm using python version 3.8.19 and hicexplorer version 3.7.2. Here is the command I run:
hicPCA --matrix CX6_200000.h5 --w…
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I installed in my debian workstation hicexplorer with conda and py37 without any issue. Today I would like to install hicexplorer in my macbook pro m1max with 64gb of RAM, but I cannot. For Apple sili…
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This was previously raised that the newest versions of hicexplore matrix build requires restriction enzyme information, which Micro-C result does not have. I used 3.4.3 version, which works well for M…
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Hi, I have a question about hicMergeMatrixBins behavior and I would like to ask you for some clarification.
I use hicexplorer 3.7.5 working with h5 files.
I've noticed, that hicMergeMatrixBins c…
qolba updated
3 months ago
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It appears that the current HiCExplorer is not compatible with python 3.10. The issue looks to be related to the 'collections' module import syntax:
`Traceback (most recent call last):
File "/us…
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when I install by gitclone，and try hicConvertFormat -h have this error，
Traceback (most recent call last):
File "/gpfs/home/pxx/soft/anaconda3/bin/hicConvertFormat", line 4, in
from hicexplo…
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ENCODE is using a new .hic format. How does hic2cool handle/read .hic files? Easiest option would be to use the latest version of [straw](https://github.com/aidenlab/straw/tree/master/pybind11_python)…
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hello,
i used conda to install hicexplorer in a new environment, but i can't use hicDetectLoops or hicHyperoptDetectLoops,
$ hicDetectLoops -h
Traceback (most recent call last):
File "/data/je…