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Hello,
Thanks for great tool. I have question regarding development of phased assembly. I used hifiasm to generate haplotype level contain assemblies. As the phases are interchanged in the hifiasm …
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I think it would be useful to have a module for this recently published genome assembler [hifiasm](https://bioconda.github.io/recipes/hifiasm/README.html)
- [x] This module does not exist yet with …
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Hi,
Thanks for developing the pipeline. I was wondering if it will support Illumina sequence data along with Pacbio/ONT.
Please let me know.
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I am very grateful for you creating such a useful tool.
I am currently trying to use the data from your study for my research and encountered some difficulties. Specifically, I am unsure whether the …
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Hi,
I have issue similar to #388 #49 #563 , but different in one point.
Namely, I am working with diploid plant genome. I have several individuals sequenced with Pacbio hifi. When assembled with hif…
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Hello!
Thank you for providing such a useful tool. I have an autotetraploid genome. Can I also use ribotin to assemble the rDNA region? In addition, my tetraploid genome cannot be assembled well usin…
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Hi @chhylp123,
I was wondering if hifiasm can run without PacBio Hifi reads. I only have Ultra long ONT reads and I am wondering if the newer flag (`-ul`) would work in such a case. Thanks!
-Ca…
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Hi,
I have used hifiasm successfully several times in the past. However lately I am running into some strange behaviour.
The subject I am trying to assemble is half the genome size of Californian …
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This is not an issue but requesting help.
Could you please help understand the genome situation in regard to the genomescope plot?
This is supposed to be a triploid lizard of around 2.5G.
With h…
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This new version 19.9-r616 is not compatable to run on HPC with ubuntu 20. It throws error for GLIBC.
hifiasm: /lib/x86_64-linux-gnu/libc.so.6: version `GLIBC_2.34' not found (required by hifiasm).
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