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Can this be added to GitHub, please?
I'd like to make an issue for it and a pull request to fix it.
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I am getting the error below on compiling htslib on using make and make INSTALL on the cluster...
but when I use make and sudo make INSTALL on personal PC it works well.
Is their a way I can com…
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If you look at my test file for [hts_endian.d](https://github.com/blachlylab/dhtslib/blob/develop/source/htslib/test/hts_endian.d), I just ported over the test cases from htslib. It would likely be to…
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relevant issue: https://github.com/LieberInstitute/megadepth/issues/6
I am trying to build megadepth on alpine container in order to have a "slimmer" image in the end.
I get various issues from co…
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Hi,
What's is wrong with passing value of `--with-htslib` with `${HTSLIB}`?
https://github.com/CSB5/lofreq/blob/54281cd875821257adfd92baa957c13d96fa58c5/configure.ac#L193
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**Describe the bug**
We tried to upgrade `zig` after 0.11.0 [release](https://ziglang.org/download/0.11.0/release-notes.html), but build failed.
**To Reproduce**
Install `zig v0.11.0` and try …
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Hi, I want to report a potentially problematic behaviour using pysam.fetch on AWS S3 bucket infrastructure. Using the following pseudo code on a Bam file in a S3 Bucket will create requests without a …
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Currently anno bundles a copy of the libtabix sources. Would it be possible to optionally allow linking with an installed upstream library, such as htslib? htslib includes an interface to the tabix …
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I am trying to build the docker image of `deepvariant` but running into problems. I'm on `r1.7` branch and my branch is up to date. I am also facing the same issues on `r1.6.1` branch as well. The com…
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Some of these look legit, some may arguably be false positives.
I also see some assignments inside of `assert()` calls in the diagnostics (there may be more in the code), which is generally conside…