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I would like to ask how Trust4 can directly analyze paired-end .fastq format data from the 10X Genomics platform for single-cell analysis, instead of analyzing BAM format data. Can you provide support…
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## 🚀 Feature
Hi guys, I'm new to github, so not sure how/where to post things.
I believe a function that uses Levenshtein distance or others would be really useful for the package
## Motivation
…
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## ❓ Questions and Help
Good Afternoon,
I was switching to immunarch from tcR.
I was missing two things in immunarch´s geneUsageAnalysis:
1. I was regularly using: `geneUsage(immdata$data, HUM…
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- **Name:** Sus Scrofa
- **Common name:** pig
Just starting this - will continue in time
https://en.wikipedia.org/wiki/Sus_(genus)
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Since Healthy isn't a disease, there is no DOID entry for it. So you can't say `diagnosis.disease_diagnosis = Healthy`.
It isn't safe to assume that `diagnosis.disease_diagnosis` == null means that…
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Hi
I need your personal point of view please
I have two `bulk RNA-seq` patients (PBMC) on which I run `mixcr`
For the same two patients I have `5' single cell` on which I run `TRUST4`
I a…
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New projects (3):
1. [Dandelion uses the single-cell adaptive immune receptor repertoire to explore lymphocyte developmental origins](https://data.humancellatlas.org/explore/projects/a83b7f45-bfb1-4c…
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## 🐛 Bug
I get this error when I use repLoad(/path/to/mixcrclonesoutputfile.txt).
Error in strsplit(df[[.dalignments]], "|", TRUE, FALSE, TRUE) :
non-character argument
I recheck the data…
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Hello and thanks for **turboGliph**! Here are a couple of issues that I have noted and am trying to understand. I use the included package dataset for reproducibility.
```
library(turboGliph)
uti…
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We need examples of the types of experiments and queries which are going to be executed against `data-refinery` data.
These examples should include the perspectives from bioinformaticist, bench re…