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Hi Timothy,
I run the coancestry analysis for a dataset of 98 individuals and 7400 SNPs. The highest values of relatedness among individuals have been obtained for those belonging to a population w…
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We want a function that generates pedigrees under simple parameterized models (e.g., Wright-Fisher, Wright-Fisher with inbreeding).
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Hi angsd developers,
Thank you for creating and maintaining this software. Near the end of the [association test documentation](http://www.popgen.dk/angsd/index.php/Association) there is a comment th…
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How many iterations does the Inbreeding Coefficient run? I tried reading the documentation but have not found the info. I am running it for a big dataset, it has been running for more than 5 days and …
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Hi community,
I want to know if selscan can detect natural selection signals in inbreeding populations using whole genome SNP data, despite the long haplotype distances caused by inbreeding and a s…
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Is it possible to find reasonable parameter values for all the costs and benefits in the model based on the literature?
- [x] `ploidy_growth_benefit` look at biomass comparisons.
- [ ] `inbreeding…
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If I would like to apply DRpower to design a study to detect a variant in a population of diploid individuals (e.g., mosquitoes), is this a reasonable thing to do, and should I treat the sample size p…
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Placeholder for adding a new module to compute Fst, inbreeding coefficient, probability of Hardy Weinberg equilibrium, etc.
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https://github.com/ChristerNilsson/Lab/blob/master/2020/022-Inbreeding/coffee/sketch.coffee
Se raderna 31-37.
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Hi~
I try to estimate the demography of two populations: PL and PS, and the sample size of them are 54 and 72 individuals respectively. the command I used to estimate are as follows:
smc++ cv --c…