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Thanks for your wonderful jobs! It can process pair end sequencing data well.
I wonder if this workflow could process data of single-end sequencing.
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Following the instructions, I attempted to compile TMAP.
I was able to run the following:
```
git clone git://github.com/iontorrent/TMAP.git
cd TMAP
git submodule init
```
However, the git submodu…
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### Description of bug
(bio) zhisong@zhisongs-MacBook-Air spades % bin/spades.py -s ../accuvirnew/bad_nano/hiv_50_2k.fastq -o testfasta --isolate
== Error == /Users/zhisong/Desktop/accuvirnew/b…
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Hi,
I incidentally poked over your project and I wonder why you keep track of `Average read depth` and of `Observed insert size`. The former would be better replaced with `Median read depth` and th…
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Dear Development Team,
When we try to validate latest TVC (v5.8) which depends on TMP. They work on torrent server, but we could not build from source since we only provided broken pieces (see issu…
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hello,
How to create control group file using 100 NIPT sequences, this is huge data, my system is getting stuck after importing one file, Is it possible for me to analyse the data in ion torr…
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I know that the development on this only supports upto 14, however I am attempting to get it on the 16 release and I'm having an issue with the build.
```
Determining if the pthread_create exist …
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I am trying to run Star using the twopassmode basic option but, I am not getting output sam/bam files. I have copied my script. The onscreen message appears and says mapping and finished successfully …
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when i try to run step 2 with the following command the CNest.py stops processing.
```
sudo docker run -v "/data/results/tools/CNest_Analysis:/input" -v "/data/results//tools/CNest_Analysis:/output"…
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I'm following instructions provided here: https://hub.docker.com/r/iontorrent/tsbuild/
```
docker pull iontorrent/tsbuild
# build all modules:
docker run -v /home/ionadmin/codes/TS:/src iontorre…