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31d09ecbdb8961c91070b9ce749b1c1c1c60071f fixes the omission of cis from the 'male' category such that the labels are now properly mutually exclusive. However, further improvements are desirable:
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Quantitative Behavior of Mass Spectrometers
To apply the theory we learnt in the last chapters of this unit to quantitative analyses with mass spectrometers, we need to think about the limitations th…
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DeMix-Q is a label-free quantification workflow that was recently published in MCP (http://www.mcponline.org/content/15/4/1467.full; shout-out to @hroest for pointing out the paper). It is largely bas…
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Potentially related to https://github.com/rust-lang/rust/issues/25860 . The issues _seem_ related but the examples are pretty different so I figured I'd file this as separate.
I'm not yet sure if I…
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The four issues below are related to the post-modelling treatment of EDS data, for quantification purposes.
1) after a model has been fitted, we use "result = m.get_lines_intensity()" to extract t…
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**Describe the bug**
The result files are written in combined/txt folder but they are empty
```
-rw-rw-r-- 1 ash022 nn9036k 0 Aug 3 12:29 summary.txt
-rw-rw-r-- 1 ash022 nn9036k 3.7K Aug 3 …
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Label-free quantification
Label-free quantification is a method that aims to determine the relative amount of proteins in two or more biological samples. It may be based on precursor signal intensity…
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Given the new `OnDiskMSnExp` infrastructure, it is time to upgrade the `quantify` method. I am considering the following signature (only focusing on the most important arguments for now):
```r
quant…
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Hi,
I am using Mesmer to segment cell nuclei of multiplexed immunofluorescence images.
To check if the segmentation works well, is it possible to obtain the segmentation outlines overlaid on the c…
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The definition of Sequence requires the use of side effects and provides no way to abandon iteration. At the surface, Sequence appears to provide similar functionality to Immutable.re's Iterable type,…