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Hi. I have a receptor-ligand complex and I'm trying to generate plots to visualize the various types of interactions between the receptor and ligand proteins. The complex has 166 residues in total wit…
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Hi Suoqin,
This is probably a silly question. I was wondering if there's a way to generate or see (either by creating a dataframe or table) a list of all the pathways and the receptor-ligand intera…
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Hello again Dr. Jin @sqjin!
Hope you are doing well. I was wondering if you could help me update CellChatDB by adding ligand-receptor pairs using data from OmniPath?
OmniPath contains a remark…
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Hi,
in the documentation ( https://ringtail.readthedocs.io/en/stable/index.html )
in the **command line interface section** there is the following statement:
_"Be cautious when adding results from …
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### In which tool?
gmx_MMPBSA
### New Feature
It would be nice to be able to suppress the ligand-ligand and receptor-receptor interactions displayed in the decomposition when done pairwise. I'm try…
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CellChat team,
I am trying to make a CellChatDB for chicken (_G. gallus_). The code is below, however when I run the `showDatabaseCategory()` function I get the following error:
```
Error: `idx`…
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Hello！
I'm currently exploring spatial transcriptomic data from colorectal cancer tissues using stlearn. I would like to know if there is a method in stlearn to quantify the receptor ligand interacti…
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When I used boltz-1 to predict the structure of a protein-ligand complex, the protein structure is fine, but the ligand pose is very distorted and rather remote from the pose in a reference x-ray crys…
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Hi,
I was looking at the contents of cellchat ligand receptor data rds. It was my understanding is that ligand name and gene symbol info should be the same in cellchat_data$interaction$ligand and c…
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Allow tumor cells to be included in extracellular network module if results are available