BiomedicalMachineLearning stLearn issues

BiomedicalMachineLearning / stLearn

A novel machine learning pipeline to analyse spatial transcriptomics data

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numba.core.errors.TypingError: Failed in nopython mode pipeline (step: nopython frontend)

#300 tangsanpang2 opened 1 week ago
0
Clarification on Directionality in stLearn CCI Plots

#299 gity123987 opened 1 week ago
0
Handling Large Datasets in stLearn and the Impact on Computational Performance

#298 gity123987 opened 1 week ago
0
label_transfer_bc.csv

#297 oabuhuss opened 2 weeks ago
0
using stlearn for the first time.

#296 oabuhuss opened 3 weeks ago
1
Run stSME clustering without HE

#295 rocketeer1998 closed 3 weeks ago
3
A problem of quantifying the interaction between two specific cell types and doing spatial mapping

#294 XianLZ2301 opened 3 weeks ago
2
Installation issue with version conflicts

#293 Huyuling1 opened 1 month ago
5
update dependency

#292 xiao233333 closed 1 month ago
0
Installation issues on linux machine

#291 chiwwong opened 2 months ago
5
module 'numpy' has no attribute 'int'.

#290 Rafael-Silva-Oliveira opened 2 months ago
1
fix: fix several bugs of CCI and zoom

#289 duypham2108 closed 3 months ago
0
How does stlearn calculates the number of L-R pairs of celltype

#288 caiquanyou opened 3 months ago
1
【bug】 code error

#287 lvmt closed 3 months ago
1
Question about st.spatial.trajectory.compare_transitions

#286 zyy23 opened 3 months ago
1
Is it possible to run CCI in muti-sample?

#285 yunbokai closed 3 months ago
1
After Downloading environment and stlearn, when I start stlearn launch this error occurs: ImportError: Numba needs NumPy 1.22 or greater. Got NumPy 1.21.

#284 marnixwkoops closed 3 months ago
1
min_spots vs. the number of total spots in many different lib-size 10x Visium samples

#283 cjhong opened 4 months ago
1
Trajectory Zoom

#282 meaksu closed 3 months ago
2
st.pl.lr_chord_plot: TypeError: __init__() takes 4 positional arguments but 7 were given

#281 Ajaingithub closed 3 months ago
4
Single cell transcriptomic data for cell-cell communication

#280 liangbolyu closed 5 months ago
3
Could not control the root in the trajectory

#279 cynthier closed 3 months ago
3
Installation issue on Mac M3

#278 earn97 opened 5 months ago
3
Issue loading stlearn

#277 KarlKaise closed 3 months ago
1
stlearn attributes not found

#276 mvereten closed 3 months ago
1
error when using st.spatial.trajectory.pseudotimespace_local

#275 cynthier closed 5 months ago
2
Question abount integrating multiple spatial data with only spatial coordinates

#274 cynthier closed 5 months ago
2
fix: fix current issues

#273 duypham2108 closed 6 months ago
0
question for st.pl.cluster_plot fuction

#272 sycdegh closed 3 months ago
2
Question on create_stlearn function

#271 cxlpanpan closed 3 months ago
2
stlearn CCI is not working for multiple slides?

#270 howtofindme closed 3 months ago
2
Interactive stLearn: BokehJS 3.1.1 successfully loaded but no picture seen

#269 howtofindme closed 3 months ago
5
Pseudo-time-space analysis problem

#268 PIGAsHIT closed 6 months ago
8
st.ReadXenium issue

#267 yandouwahhh closed 3 months ago
2
How to get clear cell-pairs and ligand-receptor？

#266 Knight1995 closed 3 months ago
3
st.tl.cci.run "AttributeError: module 'numpy' has no attribute 'int'."

#265 skim245 closed 7 months ago
2
ValueError in step 2 of CCI analysis

#264 Rachel-qianqian closed 3 months ago
2
Question about CCI distance

#263 Knight1995 closed 3 months ago
0
save anndata object to h5ad file

#262 rialc13 closed 6 months ago
2
How to get the clade no.s after generating trajectory plot

#261 rialc13 closed 3 months ago
3
Is pseudoroot & iroot the same?

#260 rialc13 closed 6 months ago
1
How to add my own LR pair?

#259 Knight1995 closed 8 months ago
4
st.add.image throwing error 'spatial/tissue_lowres_image.png' does not end on a valid extension'

#258 rialc13 closed 8 months ago
5
Allow saving tiles as PNG images in `stlearn.pp.tiling`

#257 jbschiratti closed 6 months ago
1
st.spatial.trajectory.pseudotimespace_global()

#256 yandouwahhh closed 8 months ago
2
Dimension of 'distance' in LR permutation test

#255 joan-yanqiong closed 3 months ago
1
st.spatial.trajectory.pseudotimespace_global()

#254 onionsci closed 8 months ago
9
Error in the step to stack horizontally 2 images from section 1 and section 2 in-house datasets

#253 tyaoi closed 8 months ago
1
st.pl.cluster_plot

#252 ZJU-TingYun closed 8 months ago
1
stLearn Usage

#251 rialc13 closed 8 months ago
14