-
Hi, I would be grateful if you could clarify the following points regarding LINCS data:
1. The [README](https://github.com/theislab/chemCPA/tree/main/preprocessing) file mentions that you used data f…
-
Millions of transcriptomics samples were generated by the Library of Integrated Network-Based Cellular Signatures [(LINCS) program](https://lincsproject.org/). When these data are processed into searc…
-
Biomarker App to be put into front end
Evaluate how intensive this effort will be and determine how much effort will go into this by sean and sujeet
-
- [x] Determine what data is accessible via API - @MariaJose501
- [x] Determine how API will be used within the shiny app.
We'll integrate:
- [ ] GTEx Tissue-Specific Age Group Signatures
- […
-
### Add the NIH LINCS Program landmark genes to gene_lists
The list of 978 landmark genes is here:
https://clue.io/command?q=/gene-space%20lm
The NIH Library of Integrated Network-Based Cell…
-
1.- Go to link: https://datamed.org/display-item.php?repository=0004&idName=dataset.title&id=56d0fe03e4b0cd9ed8fc739d&query=LINCS
2.- Read dataset title:
"Title: LINCS Pilot Phase Joint Project…
-
Work with LINCS (Danny) to provide training to DSGCs (possibly at their DSS meeting at the end of January).
-
Perform beta-level evaluation with Stanford and LINCS DCIC teams of the LINCS-DCIC/CEDAR pipeline.
(Preceded and followed by work on CEDAR training materials.)
-
Hello,
I presume this is an issue with reassignments of IDs that is beyond your control. Anyway, you may want to have a look into that. The background is that I wanted to map the LINCS L1000 landma…
-
in the [new docs](https://github.com/nih-cfde/cfde-submit/blob/main/docs/index.md) it says that:
```
You can specify the following [OPTIONS] with cfde-submit status.
--flow-instance-id=ID is th…