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Hi! I really appreciate for developing this powerful tool.
I met a puzzling event - there were no any MT-gene detected in some of my scTE csv files, which could be found in starsolo matrix.
Why did…
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### Context
During eval, users looking at the SingleR and CellAssign cell type predictions were confused because their predictions differed so much. They were trying to figure out which one they …
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Hi, I was just wondering if there is a way to add an extra gene(s)on top of 61 marker genes, in the core gene list before we run the analysis? Thanks, Sandeep
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Hello,
I have some clusters with differentially expresses genes generated using Seurat. I also have a highly curated gene list and I wish to perform enrichment analysis using these on each cluster …
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Difference1: differnet clusters number and position in differnet resolution(0.2/0.4/0.6)
> packageVersion("seurat")
[1] ‘5.1.0’
Seurat version 3.0.2.
Difference2: differnet clusters number…
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**Describe the bug:**
BUSCO step in eukaryotic binning fails, failing to create database in tmp
**Versions**
e.g.,
```
veba_binning-eukaryotic_2.2.0.sif
```
**Command used to produce erro…
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The current t-SNE plotting function allows a basic visualization of the data clustered with DBSCAN. However, it lacks the ability to highlight specific genes and filter clusters, which can be crucial …
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Hello, as the title say, can I use the imputed matrix to find marker genes and differentially expressed genes for downstream analysis ?
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Dear authors
I recently came across the publication "Epigenetic regulation during cancer transitions across 11 tumor types" and was impressed by the massive scale analysis you have performed.
I…
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Thank you very much for the data provided on the figshare website, but I found that only the detailed cell annotation was provided in the early_placenta_atac file, and no other RNA or ATAC file was fo…