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hlapp updated
11 years ago
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Following a conversation with @rob-knight @gregcaporaso @antgonza and @cuttlefishh, we came up with a preliminary list of algorithms that would be fantastic to include. Education and optimized version…
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I'm trying to infer a tree using concatenated SNPs and consistently get this core dump when multithreading. I do not have this problem with the original `raxmlHPC`, but it does not complete within the…
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Hi,
I tried to upgrade and install all required package to allows a smooth install with cmake, but I always get an error at the make step. I also get an error with autotools version. I copy/paste te…
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The /study/{STUDY_ID}/tree/{TREE_ID} method returns only the tree element of the NeXSON, without any of the study-level information (publication information, study id, mapping of otu elements to name…
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Is it possible to add parsimony branch lengths to a topology-only tree?
This would be a useful example.
e.g. for the following tree:
(seq1,(seq2,(seq4,(seq3,(seq5,seq6)))));
and sequences:
…
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With the current horizontal rNNI and rSPR moves, can we place a reticulation somewhere else **in a single step**?
I think no... It looks to me that we can only change one of the parents of a reticu…
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Collect functions from the main module that need to be implemented in a shared library version of IQTREE2
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In my tests, MySQL indexing is much faster than using a sqlite index, but it requires
running a mysqld. The time consumed by importing many GBs of photos and videos differs
by multiple hours between t…
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I was curious about the -fast option. The only description I can find in the manual is this:
Turn on the fast tree search mode, where IQ-TREE will just
construct two starting trees: maximum parsim…