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Dear author,
It's fancinating to integrated all kinds of miRNAs' resources.
The internet based will highlight the query speed, especially for researchers in China.
So, are there local databas…
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A list of miRNAs that need to be added to the NCRO ontology can be found here:
https://github.com/OmniSearch/omit/blob/master/src/ontology/mirna-to-add.txt
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Hi,
I am near a newbie.
"miRge2.0 relies on a huge number of libraries like:
Bowtie indexes of genome, hairping, mature miRNAs in miRBase, mature miRNAs in miRGeneDB, mRNA, rRNA, snoRNA, mature…
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While using the sponge function, result is a data table with both genes (A and B), the number of miRNAs (), gene-gene correlation (), partial correlation given all miRNAs () and the values, i.e. mscor…
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Hello, I had a quick question/clarification re: duplicate miRNA IDs. I noticed in the duplicates matrix there were a large number of miRNAs called duplicates due to the license plate but when you look…
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Hello,
I ran the code to identify the sponges, and I have a data frame containing the sponge names, the number of shared miRNAs, and the p-value. How can I obtain the names of the miRNAs associated w…
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I created a mouse annotation file according to your annotation file for the human ncRNAnome to use your Manatee Pipeline. Unfortunately I can only detect a few miRNAs with counts using this approach. …
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not only miRNAs but all kind of small RNA:
* sTOP: small transcriptome project?
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Hello this is a great tool but it takes a long time to run. Is it possible to parallelize it.
For example running it n time by dividing the query miRNAs and feeding them to the multiple running insta…