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I'm trying to run mfannot on a number of yeast mitochondrial assemblies. Nearly all of them worked perfectly but I am getting two separate errors in two separate assemblies. The command to run all of …
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Can we use both Nanopore and Illumina reads concatenated together into a single fastq file for the Mitochondrial genome assembly using Novoplasty? Or is Novoplasty specific for Illumina Data?
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Can I apply circlator to the faulty Mt contig which is present as a partly self overlapping duplicated sequence resulting from assembling the circular chromosome?
I have already assembled using canu …
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Thank you very much for making this software. I have a question: When I assembled the plant mitochondrial genome, I got a file named embplant_mt.K105.scaffolds.graph1.1.path_sequence.fasta. Can I use …
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KP.3.1.1> A1755T(Orf1a:K497I)> T26323C, C28441T(Orf9b:S53L)
Query: A1755T, T26323C, C28441T
07-04 Tirol, Austria EPI_ISL_19300318
08-26 Noord-Brabant, Netherlands EPI_ISL_19413485
Netherlands 4,…
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Hello,
I tried to find the mitochondrial sequences in my assembly.
I assembled CLR PacBio reads using CANU for a mollusc genome.
As reference I used 2 mitochondrial genomes of the same species an…
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Hi @Kinggerm, I am trying to assemble the mitochondrial genome using get organelle tool but I am keep getting this error of No valid assembly graph found. I looked in the issues section and implemente…
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THis is mitochondrial termination factor
- [ ] Mterf4 | mitochondrial transcription termination factor 4 | | protein targeting to mitochondrion | | MGI | Mus musculus | IMP | | cgi-12 protein…
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Dear Kinjo-san,
TCSF_IMRA is working great for mt genome assembly but relatively often the resulting mitochondrial contig is arbitrarily linearized in a different part than where was linearized the r…
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Hi, when using funannotate are mitochondrial contigs supposed to be included or excluded from the input assembly?
Cheers,
Bart