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Hi,
I am working on an HPC with Linux. I installed MitoHifi as stated and then I loaded MitoFinder 1.4.1.
I used the following code
`python MitoHiFi/src/mitohifi.py -o 5 -r CB_Parent.fasta -f c…
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Hello,
I have assembled a mitogenome with mitoHiFi using a reference genome from a closely related species, starting from Hifiasm contigs, I could get the final.mitogenome.fasta , then I remapped H…
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Got this error:
```
Traceback (most recent call last):
File "/opt/MitoHiFi/src/mitohifi.py", line 566, in
main()
File "/opt/MitoHiFi/src/mitohifi.py", line 491, in main
plot_annot…
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Hi Marcela!
I am trying to run MitHiFi with the testing data, the log file shows the pipeline is done, but no files were written to my working directory except for output files (.nhr, .nin, .nsq) fr…
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I am trying to run this for the first time and I am encountering the below error. The FASTA_mitos directory and the .gbk file are both being created but both empty. Any idea's what's going wrong? Than…
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Hello,
I am using MitoZ to derive the mitogenome of some Porifera and Cnidaria species. They are usually more difficult to work with (especially sponges). There is one sample that I believe has the…
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Hello, I am trying to extract COI genes from raw Illumina sequences of cestodes to try and ID the hosts. I am using the cestodes as a proof of concept but would eventually like to try it with whole ge…
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The MitoFlex view module is said to be analogous to the MitoZ module. From what I see in the MitoZ manual it would be enough to use the command below to generate a visualization of the mitogenome, but…
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Hello, I am getting the following error when running the tool on a human sample.
I don't see any prior reference to this and was wondering if you have any advice on how to proceed.
```2023-11-2…
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In the paper Changwei et al. 2024 the process of obtaining .fasta files from the other resulting files is described and used to get the published results. However, the resulting files listed here do n…