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### Overview
While working on issue #11, mixcr began to throw an error while trying to maintain read IDs during the align and assembly process. We need to include the read ids in our pipeline so that…
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Hello,
I run mixcr on all my bulk mi laboratories tcr data but I encounter a problem for two of them. Do you know what happen? Does somebody already encounter this message?
Many thanks
**My …
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## ❓ Questions and Help
Hi, I was curious whether the ambiguity of nomenclature ("TRBD1, TRBD2" and "TRBD2, TRBD1") in the below figure are caused from the MIXCR input? or the geneUsage function from…
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The path to the file loaded by collate_csr_results is hard-coded. This should be changed to use the config and the path where this file lives should also be somewhere central. We can discuss in a GAMB…
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Hi,
I have single cell BCR sequencing from 10x genomics that I analyzed with the latest version of mixcr and its dedicated preset 10x-vdj-bcr.
I would like to explore the results with immunarch bu…
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@aqzas @Huffyphenix ,
I am using CATT to extract TCR/BCR information from data from scRNA-seq of immune cells, involving more than 100 datasets. Your article gives a performance comparison of each to…
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Hi,
I am working with mouse B cell repertoires processed with MIXCR (for consistency for this project I am still using MIXCR v3.0.13). The alignment was done on the VDJregion so I can export all th…
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Dear Platypus team,
Thank you for developing this amazing package and the analyses available for TCR data are fabulous!
Can I ask a question about VDJ_call_MIXCR?
I got this error when runni…
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## 🐛 Bug
```
system.time(
immdata
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### Description of feature
Apparently this is a thing now (e.g. 10x spatial transcriptomics + mixcr, e.g. in [this paper](https://www.sciencedirect.com/science/article/pii/S1074761322000814?via%3Dihu…
grst updated
2 months ago