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Lineage B.1.20 is diverse and seems to be expanding in several countries. This proposal is for a new sublineage B.1.20+OPG188:E12K observed in USA and Germany total of 31 sequences from NCBI (soon to …
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Mpox pango aliases after two dots: so B.1.1 = C, and A.1.1 = B
For influenza, the system now uses flexible aliasing, so sometimes F = B.1.2.3.4, whereas G = B.1.2.3.4.5.6
It would be nice if SIL…
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Maybe add mpox to start page, similar to how Nextstrain displays the kind of trees one can see on the start page - would help discoverability etc.
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In the last of a 7-contig monkeypox genome assembly, RATT produces a feature like this one at the top:
```
FT repeat_region complement()
FT /note="ITR"
FT …
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### Context
Following the naming pattern set in SARS-CoV-2 sequences, strain names are usually `//`. All three fields are typically available in the metadata so we can concatenate them to "build" a r…
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Second proposal for a sublineage of B.1.20. The proposed sublineage is found in USA from public data but soon there will be more from Australia.
![Screenshot from 2024-06-03 14-20-17](https://githu…
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Only SARS-CoV-2 has pango lineages per se, there's something a bit like pango for mpox, and similar (but different) systems for flu, rsv etc
Is the lineage config field required? That would not mak…
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## Description
The following hardcoded filter parameter appears at the start of the phylogenetic workflow:
https://github.com/nextstrain/mpox/blob/2ce0d9284ccc8cf9b06e8094c7fa28c8f9d85771/phylog…
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# Content Update
## Context from clients
"I have the pleasure of introducing Lucas O’Reilly, the new TB Coordinator for DeKalb County! Please welcome him! As of last week Lucas became the TB-Refugee…
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The variable vaccine_date records the date of the first vaccination, together with vaccine_name to capture the name of the first vaccine. The WHO T1 toolkit form collects the date of the last dose rec…