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## Expected Behavior
Rather than outputting the MSA files I get a segmentation fault.
## Current Behavior
I get a segmentation fault when I add the `--allow-deletion` flag. Works when I don't use…
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Hi BoWen, i am using alphaflow train.py to trying run, but find error with below:
AttributeError: 'AlphaFoldWrapper' object has no attribute 'extra_msa_stack
and i am using:
python trai…
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I often get an MSA output where at least one sequence is 1bp longer then the other sequences in the alignment. Other software expect an alignment of equal length. Can this bug be fixed?
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**Describe the bug**
RPC messages are not queued or sent to devices
**Your Server Environment**
* own setup
* Deployment: microservices (tb-core x2, tb-rule-engine x2, tb-mqtt-transport x2…
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I'm trying to get mmseqs to output a full global multiple sequence alignment. So far, when I use the cluster mode, it gives me the MSA, but with parts with edges sequence gaps (normally in the N- and…
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Hello,
we've been trying the updated AlphaFold2_mmseqs2 notebook hoping to be able to use AF-Multimer with a custom MSA. However setting msa_mode to custom seems to be reverting the pipeline to monom…
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- [ ] 기존 모놀리틱 구조를 개선하여 DB를 여러개 두어 MSA 구조를 만들어보려고 합니다.
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Hi,
Wonderful tool! I am wondering, is there an input sytanx for using it with pre-calculated MSA, eg from the MMSeqs2 server? Should I just provide it with the a3m file instead of a fasta with on…
gezmi updated
1 month ago
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The following SFRs may need refinement or an application note:
FMT_MSA.1.1
The TSF (Trusted Security Functionality) shall enforce the Discretionary Access Control policy to restrict the ability …
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- PPanGGOLIN v2.0.5
Hi, after running and creating the pangenome file with this command, for about ~1600 GFFs:
```sh
ppanggolin \
workflow \
--cpu 24 \
--anno ppanggolin_samplesh…