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SINA
SINA - Reference based multiple sequence alignment
https://sina.readthedocs.io
GNU General Public License v3.0
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Values calculated in Log are not exportable to CSV (fn_nuc)
#111
epruesse
opened
1 week ago
0
difficulties using SINA with my own MSA
#110
korneel-emweb
closed
1 week ago
2
MSA output of unequal length
#109
dgslos
opened
5 months ago
1
Terminatin with signal 11 error
#108
tak-gk
opened
10 months ago
2
sina not working within a docker container
#107
nick-youngblut
opened
1 year ago
2
libboost library conflict with qiime2
#106
nick-youngblut
opened
1 year ago
3
Problem building / installing documentation on Debian 10
#105
a1an77
opened
2 years ago
0
Compile issue on Debian 10 (linker command line)
#104
a1an77
opened
2 years ago
0
Support arb 7.0
#103
a1an77
opened
2 years ago
0
error while loading shared libraries: libtbb.so.2
#102
rungitta
opened
3 years ago
6
Failing to load db index
#101
MPourjam
opened
3 years ago
4
Problems installing sina on macOS Big Sur
#100
JudithBernett
opened
3 years ago
1
--add-relatives outputs unexpected sequence ID
#99
glajoie1
opened
3 years ago
3
build failure ‘tbb_allocator’ is not a member of ‘tbb’
#98
smoe
opened
3 years ago
8
Custom ARB database has no taxonomy fields
#97
johanneswerner
opened
3 years ago
1
necessary fields for "-f" not stated correctly in documentation, and also not given by "--arb-list-fields"?
#96
jvollme
opened
3 years ago
1
How could I calculate identity between two 16S rDNA sequence？
#95
fujch7
closed
3 years ago
1
Base shift in copied alignment
#94
jgerken
closed
3 years ago
3
Problems with LCA quorum
#93
jgerken
opened
3 years ago
7
Implement banded alignment
#92
epruesse
opened
3 years ago
0
Sina does not actually output LCA classification anymore?
#91
jvollme
closed
3 years ago
3
sina keeps rebuilding pt-server from scratch
#90
IBG-5-KIT
closed
3 years ago
2
SINA not processing fasta files that have been filtered using vsearch
#89
dpar21
closed
4 years ago
2
Replace LCA classifier
#88
epruesse
closed
4 years ago
2
Limit max memory
#87
epruesse
opened
4 years ago
1
Fix progress bars not honoring verbosity (fixes #85)
#86
epruesse
closed
4 years ago
1
Disable progress bars
#85
nr0cinu
closed
4 years ago
5
calling SINA 1.6 from arb_edit4: positional arguments exception
#84
bph6212ln
closed
3 years ago
2
SINA alternatives
#83
ayixon
closed
4 years ago
1
v1.7.0
#82
epruesse
closed
3 years ago
1
SINA quits
#81
l-yampolsky
closed
3 years ago
6
how to ask SINA to save taxonomy search results from multiple runs into 1 file, but not save alignments?
#80
l-yampolsky
closed
4 years ago
2
SINA not running. showing Gave up (Reason: ARB ERROR: Expected entry 'baseoff' is missing for species 'A6BReg23' and Error during program execution: Failed to (re)build PT server index! (out of memory?)
#79
tia-das
closed
4 years ago
1
update SINA
#78
tia-das
closed
4 years ago
1
SINA not running
#77
tia-das
closed
4 years ago
1
SINA in ARB_EDIT4 not working
#76
mkorlevic
closed
4 years ago
3
Printing Full Phylogeny
#75
mbcouger
closed
3 years ago
4
Sina abruptly ends with "Killed" and no information.
#74
TorkelE
closed
3 years ago
9
Detect ARB database type (fail on pt server internal type)
#73
gdauria
closed
3 years ago
3
LC_ALL requirement
#72
geboro
closed
4 years ago
2
Dev
#71
epruesse
closed
5 years ago
1
Resize progress bar if terminal is resized
#70
epruesse
closed
5 years ago
1
Updating the version in Bioconda
#69
Finesim97
closed
5 years ago
10
GPL software linking against non-free library
#68
tillea
opened
5 years ago
4
Hande SIGWINCH in progress
#67
epruesse
closed
5 years ago
1
double free (concurrency bug)
#66
epruesse
closed
3 years ago
1
Dev
#65
epruesse
closed
5 years ago
1
Align reduces family if --realign
#64
epruesse
opened
5 years ago
0
Alignment stealing uses character compare
#63
epruesse
opened
5 years ago
0
Improve classifier
#62
epruesse
opened
5 years ago
0
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