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SINA
SINA - Reference based multiple sequence alignment
https://sina.readthedocs.io
GNU General Public License v3.0
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Support FastQ
#61
epruesse
opened
5 years ago
0
Control edge gap weights
#60
epruesse
opened
5 years ago
0
cseq issues append warnings
#59
epruesse
closed
5 years ago
1
Internal search ignores --fs-no-fast
#58
epruesse
closed
5 years ago
0
Internal search ignores several options
#57
epruesse
closed
5 years ago
1
Complete internal kmer search; add nice progress monitor
#56
epruesse
closed
5 years ago
1
Update spdlog and add progress monitor
#55
epruesse
closed
5 years ago
1
Check for presence of `bc` in configure (for tests)
#54
epruesse
closed
5 years ago
0
Problem regarding sina
#53
debjitde01
closed
5 years ago
9
command find_family fails
#52
lucaz88
closed
5 years ago
2
Add sphinx based docs (fixes #20)
#51
epruesse
closed
5 years ago
0
Conda environment broken
#50
Roli-Wilhelm
closed
5 years ago
6
align_ident_slv field blank if not 100% identity
#49
KasperSkytte
closed
5 years ago
4
Installing SINA from source on ubuntu 18.04
#48
KasperSkytte
closed
5 years ago
6
Work towards completed internal kmer search
#47
epruesse
closed
5 years ago
1
Option to filter gap-only columns from output alignment
#46
darcyj
opened
5 years ago
2
Reenable show-dist for alignment evaluation
#45
epruesse
closed
5 years ago
1
conda install sina installs v1.3.5
#44
btemperton
closed
5 years ago
4
Improve test coverage
#43
epruesse
closed
5 years ago
1
Improve code coverage testing
#42
epruesse
closed
5 years ago
1
Improve test coverage
#41
epruesse
closed
5 years ago
1
Add coverage tests
#40
epruesse
closed
5 years ago
1
Modernize & Cleanup
#39
epruesse
closed
5 years ago
0
Test 1.4.0-rc parallel SINA pre-release
#38
epruesse
closed
5 years ago
3
Allow adding sequence search result to output fasta (fixes #19)
#37
epruesse
closed
5 years ago
0
Improve handling of managed PT server
#36
epruesse
closed
5 years ago
0
Logging / parameter updates and add integration tests
#35
epruesse
closed
5 years ago
0
Index build only implicit
#34
epruesse
opened
5 years ago
0
Use spdlog for logging (fixes #14)
#33
epruesse
closed
5 years ago
0
Search stage not parallelized
#32
epruesse
closed
5 years ago
3
working parallel sina
#31
epruesse
closed
5 years ago
0
Check if arb_pt_server is in PATH
#30
epruesse
closed
5 years ago
0
allow reading/writing fasta.gz
#29
epruesse
closed
5 years ago
1
activation of search leads to boost exception
#28
Lagkouvardos
closed
5 years ago
1
Version 1.3.3 source dist is missing a file
#27
epruesse
closed
5 years ago
1
Binary artifacts not created for releases
#26
epruesse
closed
5 years ago
1
Add tests to verify alignment accuracy stays ok
#25
epruesse
closed
5 years ago
0
Allow asking for output to be DNA or RNA format (U vs T)
#24
epruesse
closed
5 years ago
0
Implement fast kmer search to replace PT server
#23
epruesse
closed
5 years ago
1
Looping files through SINA?
#22
larusnz
closed
6 years ago
6
Tab characters in sequence should be ignored
#21
a1an77
closed
5 years ago
2
SINA documentation
#20
ZarulHanifah
closed
5 years ago
2
Allow adding sequence search result to output fasta
#19
a1an77
closed
5 years ago
1
Merge fixes from TBB branch
#18
epruesse
closed
6 years ago
0
Allow parallel processing again
#17
epruesse
closed
5 years ago
1
Fix last line of input FASTA ignored if missing newline
#16
epruesse
closed
5 years ago
0
ARBHOME not set (w/o wrapper script)
#15
epruesse
closed
5 years ago
7
Improve logging
#14
epruesse
closed
5 years ago
1
Fix cseq length
#13
epruesse
closed
5 years ago
1
add PDF of .tex documentation
#12
rec3141
closed
6 years ago
1
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