-
Received via email:
> Hello
> I am new to Mtoolox and trying to install it. But I need some help . /MToolBox.sh
>
> Check python version... (2.7 required)
> OK.
>
> Checking files to be used…
-
Hi,
I completed MToolbox job but I'm having issues with the "Generating VCF Output" step (see attached screenshot of error).
I attached my config file and log file.
Thanks!
Mathieu Simard
…
-
I'm using MToolBox v1.2, and when I tested on the /test/sim_data that came with the download the software, I got the following error. I saw this error has come up in earlier posts but don't find a sol…
-
When I used the updated 1.1 version, the analysis running smoothly and I got test.vcf file. However, when I try the latest version 1.2, it showed errors. I got all result files except for test.vcf. wh…
-
Hi,
We are trying to analyse variants in the data obtained from oxford nanopore can we use MToolBox to analyse such data, is long read sequencing data supported by MToolBox?
Thanks and regards,…
-
Hello,
I am trying different versions of gmap from bioconda. The latest one (2018.03.25) seems to work fine. As far as the previous versions are concerned, the ones build with perl 5.26 raise no er…
-
Do you have an mtoolbox docker container publicly available? Thanks!
-
I don't think this is a bug, but the default behavior could be problematic. If the input files are of .bam format, .bam files will be converted into .fastq files, uncompressed (according to bam_input(…
dwuab updated
5 years ago
-
I often get this error when the first run fails and have to rerun the analysis. This occurs when I run MToolBox as:
```
MToolBox-variant-calling -rpk -j 5 --cluster-config cluster.yaml --latency-w…
-
Variant prioritization fails when "NA" is encountered, which throws the following error:
prioritization.py priority_tmp.txt
Traceback (most recent call last):
File "/path/to/MToolBox/MToolBox/p…