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### Description of the bug
I customised the multiqc module to have a `templates` folder.
I then applied `nf-core modules patch` which generates a `diff` file for the `main.nf`
If I then run `nf-co…
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### Description of bug
After adding `table_sample_merge` to the `nf-core/taxprofiler` [multiqc_config.yml](https://github.com/nf-core/taxprofiler/blob/0c647d1873f8562ebbd8afdfad99c978614339df/assets/…
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### Description of the bug
Previously the MultiQC output from Tomte included mRNA and rRNA percentage values.
Since the latest updates, these are no longer part of the MultiQC output.
I could…
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MultiQC doesn't appear to run in the current state of the conda environment from the yaml file. Attempting to run on a minimal dataset (2 samples) throws 'SyntaxError: future feature annotations is no…
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# Description
In the next release of balsamic, v16.0.0, the version of multiqc has changed to ensure that some metrics are correctly picked up. As a side-effect major changes to the outputted json …
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### Description of feature
We may not have to do anything if we can point MultiQC at the log files for bwa-mem and/or minimap
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### Description of the bug
- If there are two FastQC sections displaying the read stats before/after preprocessing, then why are there six samples in each FastQC diagram? I'm expecting 3 samples, a…
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### Name of the tool
Sentieon QualCal
### Tool homepage
https://support.sentieon.com/manual/usages/general/#qualcal-algorithm
### Tool description
A Sentieon implementation of GATK4 BQSR
### Too…
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### Description of feature
Not called at the moment, what can be done?
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```json
{
"Outputs": {
"interop_output_dir": {
"Key": "interop_output_dir",
"SingleValue": false,
"OutputEntries": [
{
"basename": "interop_summary_fi…