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collate_results uses the cached results table by default. This is good because it has preserved mutational signature data that has since gone away (namely the current mutational signature table omits …
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Change warning message to venn diagram of sample IDs in mutalisk dataset vs MAF dataset
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## Implementation
Comments from previous PR:
- [ ] https://github.com/cBioPortal/cbioportal-frontend/pull/4540#discussion_r1231447879
- [x] https://github.com/cBioPortal/cbioportal-frontend/pull/45…
inodb updated
11 months ago
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- For BINARY (e.g. mutational signatures), we can do Fisher’s exact test and render the data similar to Mutations.
![image8](https://user-images.githubusercontent.com/15748980/95222103-288a3f80-07c…
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[Extracted_Signatures.txt](https://github.com/sagar87/tensorsignatures/files/5852849/Extracted_Signatures.txt)
[Input_vcf_files.zip](https://github.com/sagar87/tensorsignatures/files/5852850/Input_…
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### Need
As a clinical geneticist I would like to be able to use COSMIC signatures, which can identify signatures of for instance DNA-repair mutations, which would lend confidence to the impact of …
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Hi @FreekManders and everyone,
Is there a way to use MutationalPatterns to get the SNVs correspond to a specific mutational signature?
I assume that the absolute contribution means the number of…
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Issue by @MaxUlysse, moved from SciLifeLab#666
- [ ] [ExpansionHunter](https://github.com/Illumina/ExpansionHunter) for estimating repeat sizes
- [ ] [QDNAseq](https://github.com/ccagc/QDNAseq) CN…
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Hi there,
I am finally writing up the results I got with Mutational Patterns since last year. I have NGS data with a lot of artifactual mutations from the polymerase used in PCR, which are interprete…
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> Analysis and visualization of experimentally elucidated mutational signatures
What kind of analyses can be done? A vignette demonstrating use with an example VCF file like in Bioconductor would b…