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Hi,
Im not sure if I'm doing something stupid but installed mummer via mamba in its own env. I can run mummer -h and that's fine but if I try nucmer -h or ./nucmer -p [ref] [query] it fails with th…
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Hi thanks for the great tool.
I am trying to calculate ANI between multi-contigs bins, where each viral bin consists of multiple contigs.
However, length estimate is different from the original one,…
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Hi Mahul !
I have encountered some issues trying to run quickmerge within my conda environement.
I have installed quickmerge using the following :
`conda install -c conda-forge -c bioconda q…
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Hi, I installed OPERA-MS without error. But the test data result had some problems. First, there were differences in the assembled contig length.
3,8c3,8
< *** *** Assembly size: 1642270 bp
< …
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Hello! I am attempting to patch a scaffold-assembled reference genome of a congener of my focal bird species (TANG, in the code below) with a chromosome-level reference genome of a more distantly rela…
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Thank you for developing such an excellent tool. The paper “Duck pan-genome reveals two transposon insertions caused bodyweight enlarging and white plumage phenotype formation during evolution” mentio…
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Hi, any solution for this please,
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
LANGUAGE = "en_US:en",
LC_ALL = (unset),
LC_MEASUREMENT = "en_G…
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Hi!
We're trying to use nucmer as part of a pipeline to cluster viral genomes. We run into this error when running the pipeline:
$ nucmer --coords --maxmatch --nooptimize /workspace/data/thomase4/…
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When i used nucmer to make self-alignments of genome sequences, the program was terminated after a error reported:
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::ba…
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**Version:** Version 1.1.0 (March 2022)
**Command:** `vRhyme -t 28 --method longest -i $Assemble/final.contigs.fa -g $Gene_predict/nucl.fa -p $Gene_predict/prot.fa -r $Binning/trimmed_1.fastq $Binn…