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This request comes from forum thread https://forum.image.sc/t/saving-tiff-using-bioformats/34932/2
For OME-TIFF physical size is populated for X, Y, Z. However for standard TIFF it is only availabl…
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### Describe the Bug
this plugin uses tifffile's is_mmstack parameter but that parameter was only added after our minimum tifffile dependency requirement
### Expected Behavior
consistency o…
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Hi,
Thanks for the super impressive tool which helps me a lot.
But I found some issues when running deepcell mesmer: only nuclei mask.tif was obtained for ome.tiff file/non-RGB tif files. My ome…
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please, How to convert TB size TIFF stack into OME-zarr
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I would like to be able to encode and decode tiff images that follow the OME-TIFF/OME-XML specifications.
My specific use case for this functionality is in microscopy imaging or bio-imaging experim…
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Hi,
I am running 'steinbock preprocess external images' on a CODEX-generated .ome.tiff, which has been exported from QuPath. When converting to 'steinbock file format' I receive the following warni…
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Issue was raised on forum thread https://forum.image.sc/t/how-to-split-and-recombine-multiple-series-with-bfconvert/73662/2
In the thread the user had a multi resolution file (SCN format) with addi…
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Hi,
First thank you for this great package!
Flow_registration outputs multi-channel TIFF stack with dimensions `frame x (spatial_1) x (spatial_2) x channel`. However, Suite2P (package for cell s…
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Does slideio accept images in OME-TIFF format ?
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Hi @haesleinhuepf
In terms of test cases:
- opening ome tiff files
- computing histogram of image intensities
- fft or fourier transform
- operations involving processing shapely polygons
…