BodenmillerGroup steinbock issues

BodenmillerGroup / steinbock

A toolkit for processing multiplexed tissue images

https://bodenmillergroup.github.io/steinbock

MIT License

49 stars 14 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Bug fix: set mask numpy dtype output as `uint32` instead of `uint16`

#266 matt-sd-watson closed 6 days ago
1
Update build.yml to use self-hosted runner

#265 Milad4849 closed 2 weeks ago
0
Update build.yml

#264 Milad4849 closed 2 weeks ago
0
[pre-commit.ci] pre-commit autoupdate

#263 pre-commit-ci[bot] opened 3 weeks ago
0
Update readimc to 0.7.0 + lenient parsing option

#262 matt-sd-watson closed 1 month ago
2
update readimc to 0.7.0 for lenient parsing

#261 matt-sd-watson closed 1 month ago
0
Strange invalid literal error..

#259 paulrbuckley-kcl opened 2 months ago
2
steinbock apps ilastik - Ilastik crashing upon startup

#258 Will760 closed 2 months ago
1
[pre-commit.ci] pre-commit autoupdate

#257 pre-commit-ci[bot] closed 1 month ago
0
deepcell segmenting error

#256 megankmckie closed 1 month ago
2
error with preprocess imc images --hpf50

#255 megankmckie closed 2 months ago
1
1 really poor, but essential, marker with extremely high background

#254 FelixShore1 closed 2 months ago
1
two sets of images with slightly different panels

#253 Will760 closed 2 months ago
4
issue of Segmentation fault

#252 dingxm closed 2 months ago
1
Unable to find image 'preprocess:latest' locally error

#251 MAvdB-KCL closed 2 months ago
1
[pre-commit.ci] pre-commit autoupdate

#250 pre-commit-ci[bot] closed 2 months ago
0
random forest-based segmentation using Ilastik/CellProfiler

#249 mjnajafpanah closed 2 months ago
6
preprocess imc panel Error

#248 LukasHats closed 3 months ago
2
Cannot open Ilastik through steinbock apps ilastik command

#247 gemmawilson closed 3 months ago
2
External OME.TIFF file segmentation , transformed from qptiff

#244 alexeykb closed 3 months ago
11
[pre-commit.ci] pre-commit autoupdate

#243 pre-commit-ci[bot] closed 3 months ago
0
Error: No panel/.mcd/.txt file found

#242 icepsi23 closed 4 months ago
4
Intensities csv labeling objects only evens

#241 megleila closed 4 months ago
4
[pre-commit.ci] pre-commit autoupdate

#240 pre-commit-ci[bot] closed 4 months ago
0
Documentation is inaccessible

#239 LenisLin closed 5 months ago
0
ose

#238 Elena983 closed 5 months ago
1
qptiff format

#236 alexeykb closed 5 months ago
3
Export AnnData error

#235 megleila closed 4 months ago
3
[pre-commit.ci] pre-commit autoupdate

#234 pre-commit-ci[bot] closed 5 months ago
0
[pre-commit.ci] pre-commit autoupdate

#233 pre-commit-ci[bot] closed 6 months ago
0
[pre-commit.ci] pre-commit autoupdate

#232 pre-commit-ci[bot] closed 6 months ago
0
Tiff Images from Leica Stellaris

#231 rana228 closed 4 months ago
4
Steinbock preprocess IMC produces empty TIFF files

#230 Dmitry-Khochanskiy closed 5 months ago
2
steinbock measure neighbors very slow

#229 dingxm closed 5 months ago
2
Differences in segmentation results

#228 DomenicoSkyWalker89 closed 7 months ago
12
[pre-commit.ci] pre-commit autoupdate

#227 pre-commit-ci[bot] closed 7 months ago
0
Updated citation

#226 nilseling closed 7 months ago
4
deepcell error

#225 francescaclemente closed 6 months ago
6
Hot pixel filter issue

#224 giuliospinozzi closed 7 months ago
2
Mask signal discordance

#223 megleila closed 10 months ago
6
ArrayMemoryError - 'measure_centroid_distance_neighbors'

#222 paulrbuckley-kcl closed 7 months ago
3
[pre-commit.ci] pre-commit autoupdate

#221 pre-commit-ci[bot] closed 7 months ago
0
Unable to detect files and directories

#220 alasdairball closed 7 months ago
9
Could not open ilastik GUI in windows

#219 ReethikaC closed 4 months ago
4
Develop

#218 Milad4849 opened 10 months ago
5
corrected cellpose_view_cmd

#217 Milad4849 closed 7 months ago
0
Implemented cellpose2.0 model zoo and training

#216 Milad4849 closed 7 months ago
1
Develop

#215 Milad4849 closed 10 months ago
0
Cellpose app

#214 Milad4849 closed 10 months ago
1
update develop with recent changes in main (bug fixes etc)

#213 Milad4849 closed 10 months ago
0