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`create_position` fails with following example:
```
from iohub import open_ome_zarr
ds = open_ome_zarr("~/Documents/tmp.zarr", layout='hcs', mode='w', channel_names=['GFP'])
ds.create_positi…
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It would be great to support ome-zarr labels data.
This is a zarr image where values of 0 are transparent (no label) and colour of each label may be specified by metadata:
https://github.com/ome/ome…
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Compression was (and it is still disabled) because of this issue: https://github.com/ome/ome-zarr-py/issues/219
The new `ome-zarr-py` version should have this addressed. Check this and re-enable the …
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I am noticing that the OME-Zarr specifications have an option to have a "color" properties within the channel metadata. We use this property do define the colormap for when `napari-ome-zarr` opens up…
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Dear all,
Could you tell me if there is any documentation available for ome-zarr-py?
Also, is it possible to straightforwardly parse zarr arrays contained in ome-zarr fileset using original zarr P…
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When this was still named `faim-hcs`, we had this code to compute histograms and add it to the zarr `attrs`:
https://github.com/fmi-faim/faim-ipa/blob/7594dc679baef9715ec4d193557dae4c617372f2/src/f…
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https://forum.image.sc/t/mobie-ome-zarr-hcs-use-zattrs-omero-channel-color/96491/3
To do this I would need parse the .zattrs JSON, ideally directly into a corresponding Java class. @joshmoore do yo…
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Ideally bioio should support the latest numpy.
I checked with the [ruff rule for numpy 2.0 migration](https://numpy.org/devdocs/numpy_2_0_migration_guide.html#ruff-plugin), which is not (cannot pos…
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Let's improve our strategy for plate name of the OME-Zarrs. We want to avoid some special characters like # (see https://github.com/fractal-analytics-platform/fractal-vizarr-viewer/issues/33). We shou…
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Hi all,
following up an issue I created [over at ezomero](https://github.com/TheJacksonLaboratory/ezomero/issues/109), I am having some trouble uploading zarr to our omero server.
I created a te…