-
Hi All,
I'm working on this project where I add light and heavy-labeled peptides together, mix them and run on an Orbitrap, using LC-DIA.
Interestingly, when I create my own peptide library usi…
-
Hello Vadim and Team,
I am using a spectral library for modified histone peptides that I built in skyline. I have some questions regarding using this library...
1. What is the best way to conver…
-
Dear @jorainer
following up on the conversation in the slack channel, here comes the issue in the `Spectra` package.
The idea was to be able to calculate HUPO-PSI-defined quality metrics (http…
-
- [x] Number of Peptides identified: Total number of peptide Sequences identified.
- [x] Number of PeptidoForms: Number of Peptides + modifications + position of the modification.
- [x] Number of …
-
We have been trying to run the old version of SGPS and it keeps failing with few datasets mainly with Peptide Shaker, I am sharing an example of SGPS testing.
https://usegalaxy.eu/u/subina/h/metaprot…
-
A peptide spectral library is a curated, annotated database of LC-MS/MS peptide spectra. One essential utility of a peptide spectral library is to serve as consensus templates supporting the identific…
-
A peptide spectral library is a curated, annotated database of LC-MS/MS peptide spectra. One essential utility of a peptide spectral library is to serve as consensus templates supporting the identific…
-
We need to implement a library that give us numbers about the spectra identified and the number of identifications per search engine. This library will allow us trace the changes in the run, results, …
-
Related to PS issue 260.
Data to reproduce the issue can be found here: http://vedlegg.uib.no/?id=4ecd6fd34cc85e9f5eb518a12bb0a55a.
```
java.lang.IllegalArgumentException: Two modifications fou…
-
Hello, I'm having a lot of difficulty understanding how to map pepquery output to TMT tag of GTEx so that I can correctly map peptide to sample_ID.
I know this issue was opened before, but I do not…