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I ran the following code using rpx for Bioc 3.16 running R 4.2.2 on an Intel Mac running OS 12.6. Errors are shown within the code. Note that I had no trouble loading the example data set. Other data …
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We are using moFF on a larger dataset (27 label-free runs) and it takes a very long time (about 40h), even with setting for 16 threads and 150GB RAM.
Are there any parameter settings that can shor…
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### Source Name
Mass Spectrometry Interactive Virtual Environment (MassIVE)
### Source URL
https://massive.ucsd.edu/ProteoSAFe/static/massive.jsp
API Documentation: https://ccms-ucsd.github.io/Mas…
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I'm not really sure whether this is a Unimod problem or an example file problem, but the multiple_spectra and scores_and_thresholds examples for 1.3 use UNIMOD accessions that are not present in eithe…
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Hi, I am hoping to use the pretrained DeepNovo model (V1) to generate feature embeddings for my data to benchmark. Is a pretrained model available to download? Alternatively, did you train your model …
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Taken from #74 -----
This feedback has been collected from the survey form. In order to protect user's privacy, the personal information has been removed.
Please provide metadata on the specific publ…
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Our schema nominally defines an error result as this:
```json
Error:
required:
- code
- message
properties:
code:
…
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Is there an existing MI for proteomics data that we can assess resolute against? Goal is to provide a wish list metadata for upcoming datasets
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# Abstract
Data Independent Acquisition (DIA) creates a “permanent record of everything” that is ideal for reanalysis, arguably the primary goal of public data repositories.
Within ProteomeXchange…
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## User story
>As a curator
>I want to be able to add accession numbers of externally hosted linked data
>So that we can link directly to relevant data hosted in external repositories such as INS…