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Hello,
I am trying to map my trimmed reads to a pseudo-reference sequence. I have seen that for phyluce versions 1.4 and 1.5 this was done using the snsp.py script and I have also seen that there us…
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ECK supports defining role mappings via [configuration policies](https://www.elastic.co/guide/en/cloud-on-k8s/master/k8s-stack-config-policy.html#k8s-stack-config-policy-definition). These are known a…
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### Has this bug been raised before?
- [X] I have checked "open" AND "closed" issues and this is not a duplicate
### Description
Encountered the following error when trying to run a GitHub Action:
…
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Hi,
I have a particular case and wanted to know If I can address this with `minimap2`. I have some Illumina reads that come from several amplicons and I also have a list of primers that generated …
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Hello @rrwick,
I experienced some poor mapping performance with Minimap2 for reads simulated using the pacbio2016 (only changing depth, mean sequence identity, all other settings as default). I notic…
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Hi, zhangkai:
I am using SnapATAC2-v2.7.0
Due to experimental issues, I obtained a poor quality dataset where R1 consists entirely of fixed sequences, with R1 mapping accounting for only 6.74% of to…
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Dear author, I have read the article your team published in nature genetics. It's a really good study! Thank you for writing this detailed tutorial, which was very helpful for me to learn how to analy…
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### Is your feature request related to a problem? Please describe.
When clibing up the Z level (for example using downspout), directional choices are hard-numbered 1~n. It'd make more sense if they c…
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## Problem Summary
Several values in HuBMAP metadata require consolidation or mapping updates to align with the current standards. The issue affects two categories:
- **Granularity Mismatch Mapp…
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it appears gnumap doesn't do paired reads. need to add this support.