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We should automate a check that Relion can read our output files, and vice versa.
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**Describe your problem**
Hello, I have an issue trying to align my tomograms using Aretomo in Relion 5.
Alignment using Imod works but does not give me satisfactory results, I also have Aretomo…
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Can not launch the Relion GUI for the 3.* version of the containers:
```
$ module load relion/3.1.0
$ relion
INFO legacy OFED driver set: 4.7-3.2.9.0
FATAL Failed to find relion in PATH…
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I and @scheres are interested in better RELION integration of Topaz.
Several things we wish are:
- Take a list of micrographs as a file (Issue #47)
Note that there is a limitation in the len…
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---
Author Name: **Gabriel Lander** (@gclander)
Original Redmine Issue: 5180, https://emg.nysbc.org/redmine/issues/5180
Original Date: 2017-08-30
Original Assignee: Gabriel Lander
---
added functi…
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Hi there I am using relion5 running via SGE/qsub on aws clusters.
So far everything was running fine on g5 instances which use a NVIDIA A10G Tensor Core GPUs. We now switched to g6 instances which…
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Running on a Linux Deb 12 compute cluster, have tried on various GPU nodes.
Running relion/5 beta-3-commit-6331fe.
For example when I run the command below:
relion_python_tomo_align_tilt_ser…
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issue 46 from gitlab
Naming outputs according to the basename of the meta_file works well for cryosparc metadata files but not for relion (they are usually called relion or run_data etc...).
I think…
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here is my commandline:
====================
srun --mpi=pmi2 `which relion_refine_mpi` --o Refine3D/job001/run --auto_refine --split_random_halves --i job025_tutorial.star --ref HA_reference.mrc --f…
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Hi,
I suffer from a lack of permission on our GPU cluster so opted to go for the singularity Topaz container as a way to access the Relion integration. Thank you for this option, it is a fantastic…