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### Description of the bug
I am running the most current version of @marchoeppner dev branch on Tower on a real dataset. The workflow passed repeat masking and produced the `consensi.fa` file but fai…
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(from @fubar2)
# TreeValGal/EBPhib workflows: October 9 status
### 1\. Current state:
* Two workflows that could be combined into one.
* Need a new name
* Both running on EU and on VG…
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Hi @rmhubley and everyone,
I finished several rounds of RepeatModeler, but I have an error in the RepeatClassifier step. It seems I am missing several required files for RepeatClassifier: `RepeatP…
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**Describe the issue**
RepeatMaskerLib.embl is not built while configuring RepeatMasker-4.1.2-p1 and is requestrd by DateRepeats
```
rpm_maker:RepeatMasker/RepeatMasker-4.1.2-p1 > DateRepeats
I…
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A clear procedure needs to be developed to gather inputs to run each new assembly:
- Two assembled haplotypes (same contig names);
- Optional NCBI gene/rna/protein taxon id and downloaded fasta fil…
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I am running Repeatmasker on a snake genome using a denovo TE library (created by RM2) on a HPC cluster using 20 CPUs. But the speed is very low and I encounter node failure. I contacted HPC support a…
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Hi TobyBaril.
I would like to ask for you help concerning a RepeatMasker error.
We are trying to annotate a new genome assembly of Trypanosoma cruzi, whose NCBI Taxid is 5693. Earl Grey was inst…
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Hi, I am using RepeatMasker v4.1.5 to mask repeats from a shrimp genome P. indicus, the *.fa.cat.gz was produced but the fa file cannot be masked. So I rerun the ```ProcessRepeats``` step:
``
Proc…
Knnnk updated
1 month ago
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Hi, I am using RepeatMasker version 4.1.6, with wublast engine and customized library.
Here is the output I have:
RepeatMasker version 4.1.6
WUBlastSearchEngine::setPathToEngine( /path_to/abbla…
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Hi,
I'm trying to use carp with RepeatMasker, according to your user manual. Can you tell me where I can find the format_RMSK.pl file?
Thanks!
Kayla