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GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0000413 protein peptidyl-prolyl isomerization
GO:0001932 regulation of protein phosphorylation
GO:0001933 negat…
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I have RNA modbams with m6A (in DRACH motifs) and everything runs without error but wgmeth/differential methylation results are sort of confusing - are there going to be RNA-specific additions to meth…
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I think I get where the modification probabilities are coming from (ML values / 256). But if I pass a filter that's being used for both modified and canonical calls, where does the canonical base prob…
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Dear all,
The transcription group is proposing to obsolete GO:0061715 miRNA 2'-O-methylation, since it is a molecular function. Consider replacing with GO:0090486 small RNA 2'-O-methyltransferase …
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Added new columns and data to previous table in issue#445
| File Category | Old Data Filename | New Data Filename …
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RNA-Skim: a rapid method for RNA-Seq quantification at transcript level
http://bioinformatics.oxfordjournals.org/content/30/12/i283.full.pdf+html
Li HD, Menon R, Omenn GS, Guan Y. (2014) The emerging…
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## Progress Report of Bloodies
#### What has changed based on the final proposal
We are using the same datasets as proposed but has eliminated a few samples from the analysis. For example, we remov…
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mRNA methylation is now gone, but it seems odd that we have the other methylation terms.
@pgaudet Should this branch have "do not annotate" added, pending obsoletion?
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Hi Nelson @UCDNJJ ,
Thanks for releasing this wonderful cell type taxonomy, I quickly performed an integration between our human single-cell DNA methylation dataset with your human sc-RNA-seq datas…
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Hi all,
These three new terms will be added to the ontology in order to allow curation of some types of RNA interactions and RNA/DNA-related features:
[Term]
id: MI:2201
name: DNA chemical modificat…