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**DO NOT INCLUDE REQUESTS IN THE FIRST COMMENT.**
**PLEASE POST THIS TEMPLATE UNCHANGED THEN FOLLOW ITS INSTRUCTIONS IN A NEW
COMMENT**
# General Notes
This repository serves as a mostly automated p…
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**# When I run T-DESEQ2 in bulk RNA sequencing analysis.**
treatment_groups=['4-3','4-4']
control_groups=['1--1','1--2']
result=dds.deg_analysis(treatment_groups,control_groups,method='DEseq2')
…
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# Issue Report
## Please describe the issue:
Read splitting didn't work properly in my sequencing data.
This is a similar issue to #709 but my sample was sequenced with RNA004.
The image below i…
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**LAST EDITED: Aug, 29, 2024**
See parent Epic for further information.
https://github.com/chanzuckerberg/single-cell/issues/644
See current draft for spatial support in SOMA https://docs.goog…
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I know that there is already an existing single cell workshop in the incubator. But we developed on last year and have presented it twice. We have received positive student feedback and made several c…
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Should the sequencing depth of different datasets and batch effect issues be considered when merging RNA-seq data from different cohorts for input?
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Hi @cying111 , thank you so much for putting this dataset together. I am interested in comparing different quantification methods using this dataset, and I am specifically interested in this sample:
…
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CNVkit is a best python package to infer copy number information from high-throughput sequencing data
Actually, We are very excited to find that you have provided new function within the software pac…
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# 运行代码
$ source ~/dnbc4tools/dnbc4tools2.1.3/sourceC4.bash
$ genome=~/dnbc4tools/GRCh38_gencode_v44_ref/
$ ~/dnbc4tools/dnbc4tools2.1.3/dnbc4tools rna run --name D2_1 \
> --cDNAfastq1 ./HRR1822706…
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Several grammar and spelling mistakes...