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Would be great if PEtab would be usable with non-SBML models. Formats to consider would include e.g. cellML, bngl, pysb, .... Personally interested in pysb support.
Will be a significant implemen…
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**Is your feature request related to a problem? Please describe.**
I am trying to import a SMBL file.
In particular [this one](https://raw.githack.com/BioSystemsUM/MEWpy/6a5031d6b8c654e15b7b53778d7a…
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**Format name:** SBML-DFBA
**Short description:** SBML-DFBA is a schema for encoding dynamic flux balance analysis models into SBML, SBML-comp, and SBML-fbc
**Parent URI(s):** format_2585
**…
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When the order of models input to COBRA and then to COMETS changes, the results are changed.
cobra.io.read_sbml_model(model_1)
cobra.io.read_sbml_model(model_2)
has different results from:
cobra…
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While trying to reproduce an old problem, I noticed that if I try to build a very simple model and convert it to SBML, it crashes due to some units problem.
![sbml2model](https://cloud.githubusercon…
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Hi,
I'm trying to build a micom database with AGORA2 models (micom.workflows.build_database) and i'm facing issues with 1746 of the 7302 models. This is one of the reconstructions that failed to be r…
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**What did you expect to happen?**
Sensitivities to be computed
**What has happened instead?**
`rdata.x` and `rdata.sx` are zero matrices
**To Reproduce**
Compile a model with algebraic expre…
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**Which problem would you like to address? Please describe.**
The CellML team is about to implement support for parameter estimation in OpenCor, and originally investigated PETab as the format to use…
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Hello, I am trying to create a model of Macaca Mulatta (mmul) using MetaDraft. I have the `.faa` file for mmul, along with a Homo Sapien `.gbff` file and an SBML file (Recon3D from the BiGG database).…
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I found the following in the latex files of the SBML specification docs. They still need to be redirected or equivalent pages need to be created on sbml.org.
- [x] http://www.sbml.org/
- [x] http:…